83. Lin L., Park JW., Ramachandran S., Zhang Y., Tseng YT., Shen S., Waldvogel H., Curtis M., Faull R., Troncoso J., Ross C., Davidson BL.+, Xing Y.+ (2016) Transcriptome sequencing reveals aberrant alternative splicing in Huntington's disease. Human Molecular Genetics, 25(16):3454-3466. (+ joint corresponding authors). [journal]
82. Molinie B.*, Wang J.*, Lim KS., Hillebrand R., Lu ZX., Van Wittenberghe N., Howard BD., Daneshvar K., Mullen A., Dedon P., Xing Y.+, Giallourakis CC.+ (2016) m6A level and isoform characterization sequencing (m6A-LAIC-seq) reveals the census and complexity of the m6A epitranscriptome. Nature Methods, 13(8):692-8. (+ joint corresponding authors; * joint first authors). [journal] [UCLA news release] [GenomeWeb news story] [News & Views by Nature Methods]
81. Lam MP., Venkatraman V., Xing Y., Lau E., Cao Q., Ng DC., Su AI., Ge J., Van Eyk JE., Ping P. (2016) Data-driven approach to determine popular proteins for targeted proteomics translation of six organ systems. J Proteome Res, 15(11):4126–4134. [journal]
80. Shen S., Wang Y., Wang C., Wu YN., Xing Y. (2016) SURVIV: Survival Analysis of mRNA Isoform Variation. Nature Communications, 7:11548. [journal] [UCLA news release] [GenomeWeb news story]
79. Park JW.+, Chung S., Rouchka E., Tseng YT., Xing Y.+ (2016) rMAPS: RNA map analysis and plotting server for alternative exon regulation. Nucleic Acids Research. 44(W1):W333-8. (+ joint corresponding authors).[journal] [rMAPS web server]
78. Yang Y.*, Park JW.*, Bebee TW., Warzecha CC., Guo Y., Shang X., Xing Y.+, Carstens RP.+ (2016) Determination of a comprehensive alternative splicing regulatory network and the combinatorial regulation by key factors during the epithelial to mesenchymal transition. Molecular and Cellular Biology, 36(11):1704-1719. (+ joint corresponding authors; * joint first authors) [journal]
77. Lin L., Jiang P., Park JW., Wang J., Lu ZX., Lam MP., Ping P., Xing Y. (2016) The contribution of Alu exons to the human proteome. Genome Biology, 17:15. [journal] [Genome Biology Research Highlight: Proteome diversification by genomic parasites]
76. Cieply B.*, Park JW.*, Nakauka-Ddamba A., Bebee TW., Guo Y., Shang X., Lengner CJ., Xing Y.+, Carstens RP.+ (2016) Multiphasic and dynamic changes in alternative splicing during induction of pluripotency are coordinated by numerous RNA binding proteins. Cell Reports, 15, 1–9. (+ joint corresponding authors; * joint first authors). [journal]
75. Ji X.*, Park JW.*, Bahrami-Samani E., Lin L., Duncan-Lewis C., Pherribo G., Xing Y.+, Liebhaber SA.+ (2016) αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome. Nucleic Acids Research, 44 (5): 2283-2297. (+ joint corresponding authors; * joint first authors). [journal]
74. Katrib A., Hsu W., Bui A., Xing Y. (2016) “RADIOTRANSCRIPTOMICS”: A synergy of imaging & transcriptomics in clinical assessment. Quantitative Biology, 4(1): 1–12. [journal]
73. Damianov A., Ying Y., Lin CH., Lee JA., Tran D., Vashisht AA., Bahrami-Samani E., Xing Y., Martin KC., Wohlschlegel JA., Black DL. (2016) Rbfox splicing regulators are recruited to pre-mRNA as part of a novel multi-protein complex, LASR. Cell, 165(3): 606-619.
72. Ruscetti M., Dadashian EL., Guo W., Quach B., Mulholland DJ., Park JW., Tran LM., Kobayashi N., Bianchi-Frias D., Xing Y., Nelson PS., Wu H. (2016) HDAC inhibition impedes epithelial–mesenchymal plasticity and suppresses metastatic, castration-resistant prostate cancer. Oncogene, 35(29):3781-95. [journal]
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